Showing posts with label ontology. Show all posts
Showing posts with label ontology. Show all posts

Monday, September 14, 2009

Strange reality of academic workspace

My sister forward this job posting to me.

We are looking for a researcher or consultant to participate in the
collaborative development of Neural ElectroMagnetic Ontologies (NEMO). This
NIH-sponsored position would involve developing ontologies for
representation of patterns in event-related brain potentials (ERP) data
that reflect various aspects of language processing.

The Associate would work with members of our International NEMO Consortium
(experts in EEG and MEG studies of language) to develop, manage, and curate
ontology and database structures for this project. Please see the website
for more information, and contact Gwen Frishkoff if you have any questions.
The ideal candidate would have a background in cognitive neuroscience,
experience with database design and curation, and/or familiarity with
Protege/OWL ontology development
software...
Sounds like an interesting job that matches my background pretty well, but read on..
Salary will be commensurate with experience in the range of $30-$40K per year.
Perhaps I'm just greedy...


Wednesday, August 1, 2007

Connotea + Semantic Web = E.D.

What do you get when you combine social tagging with terms from web-accessible ontologies?

E.D. the Entity Describer

ED helps people use terms from ontologies* as their connotea tags.
Is it useful, interesting, a total waste of time? I'm not really sure yet, but it seemed like it would be fun. If you have some time, please do give it a try and let me know what you think! Details about installation etc. here


* Here 'ontology' just refers to any OWL/RDF document. The 'terms' are the rdfs:labels for the classes or the actual class name if the labels are missing. E.D. only "understands" rdfs:label and rdfs:subClassOf. It would make more sense to follow a SKOS model as the only semantics we plan to use are "broader-than" and "narrower-than"; but, since the large majority of OWL ontologies that we are interested in use subClassOf even when they mean skos:narrowerThan , we do the same within E.D. Support for ontologies/thesauri that are encoded with the SKOS ontology will be added as the need arises.

Friday, June 15, 2007

Ack "ontology"!

I just realized the word "ontology" managed to creep into that last post (in palaeontology).

There truly is no escape for me..

Wednesday, May 9, 2007

WWW2007, workshop on the collaborative construction of structured knowledge

I just returned from the World Wide Web conference in Banff, Alberta, Canada and now I'm frantically trying to assemble some notes before it all fades into the memory fog.

The first day of the conference I attended a workshop on the collaborative construction of structured knowledge. The purpose of the workshop was to explore requirements, opportunities, and current tools for enabling multiple people to contribute to the same knowledge resource. The resources ranged from tags at the bottom, through wikis, to the creation of description logic ontologies. Below I offer a few highlights of the day from my perspective, starting with my own little brush with fame.

Prior to the workshop, there was a competition involving 6 new collaborative KR tools. In this competition, the users of the tools competed with one another based on how many bits of knowledge that they constructed with the tools and on the quality of the comments that they provided to the tool builders. The contest incentivized people to actually try the (mostly pre-alpha..) tools thoroughly, thus providing the tool builders with good feedback and stimulating discussion at the workshop. At the end of the workshop, Natasha Noy, one of the organizers and a pre-eminent figure in the world of ontology based knowledge representation, preceeded her presentation of the results of the competition by acknowledging that a paper by "Mark Wilkinson" provided some of the inspiration for the idea of the competition. Ahem.

As the first author of the paper that she was referring to, I was 99% thrilled to have it recognized by such a prestigious figure but (at least) 1% distressed that it was referred to as Mark's paper without any mention of me or any of the other author's (though the others had a very limited role). I spoke up and she immediately apologized - and did so again in person after the end of the session. I have no hard feelings about it, and like I said, am delighted that people like Natasha, who are at the very top of this field actually knew about my work; however, the whole episode brings up a lot of interesting facets of the culture and perhaps the economics of academia (and perhaps all human society in the networked world) that might help to shed some light on the questions about blogging I am still trying to work through. I'll talk about this more in another entry..

A few highlights:
1) Andrew Gibson - Described the need for people of different backgrounds and with different desires to interact with ontologies. This provided some of the motivation for a web2.0 classification system for ontologies. Each ontology would have its own 'profile' consisting of meta-data (kept distinct from the ontology file) that would include information about aspects such as authorship, revision state, history, purpose, deployments, users, and even threaded discussions.

Cool, lets make it happen.

2) Michael Backhaus presented BOWiki - a biology specific semantic media wiki. Interesting to see if the work they did in grounding it in an upper ontology of function will matter. (Only if they can actually get users..)

3) SOBOLEO - My personal favorite entry in the challenge because a) it worked for me b) it was simple and c) I enjoyed the live edit tracking feature.

4) Also from SOBOLEO group: A very clever idea called imagenotion. Basically, it replaces concept term labels with pictures. I think this is an obvious (in retrospect) and potentially extremely powerful thing to enable. Is a picture worth a thousand words? Has to be a paper title for them if it isn't already. The incorporation of multimedia in the ontology browsing/creation experience is going to be exciting because it will really make it much easier (I think) to communicate the concepts with real people (not robotic logicians).

5) Great keynote "Stone Soup", "freebase" on economic lessons for the now web.

More to come on this..

Wednesday, February 14, 2007

iCAPTURER1 paper accepted

First knowledge gardening paper accepted in September of 2005

Good B,Tranfield EM,Tan PC, Shehata M, Singhera GK, Gosselink J, Okon EB, Wilkinson
Fast, Cheap, and Out of Control: A Zero Curation Model for Ontology Development
at the Pacific Symposium on Biocomputing 2006.

See here for PDF